Awesome-GNN-based-drug-discovery

Molecular property prediction


  1. Neural Message Passing for Quantum Chemistry
    • By: Gilmer, J. et al., 2017
    • Journal: International Conference on Machine Learning, ICML 2017
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  2. Molecular contrastive learning of representations via graph neural networks
  3. Review Study: Application of message passing neural networks for molecular property prediction
    • By: Tang, M. et al., 2023
    • Journal: Elsevier, Current Opinion in Structural Biology
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  4. Review Study: A compact review of molecular property prediction with graph neural networks
    • By: Weider, O. et al., 2020
    • Journal: Elsevier, Drug Discovery Today
    • Read: Access the study
  5. Analyzing Learned Molecular Representations for Property Prediction
    • By: Yang, K. et al., 2019
    • Journal: Journal of Chemical Information and Modeling
    • Read: Access the study , Github
  6. MD-GNN: A mechanism-data-driven graph neural network for molecular properties prediction and new material discovery
    • By: Chen, S. et al., 2023
    • Journal: Elsevier, Journal of Molecular Graphics and Modelling
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  7. Equivariant Graph Neural Networks for Toxicity Prediction
    • By: Cremer, J. et al., 2023
    • Journal: Chemical Research in Toxicology - American Chemical Society
    • Read: Access the study , Github
  8. Combining Group-Contribution Concept and Graph Neural Networks Toward Interpretable Molecular Property Models
    • By: Aouichaoui, A. et al., 2023
    • Journal: Journal of Chemical Information and Modeling - American Chemical Society
    • Read: Access the study, Github
  9. Chemistry-intuitive explanation of graph neural networks for molecular property prediction with substructure masking
  10. ASGN: An active semi-supervised graph neural network for molecular property prediction
    • By: Hao, Z. et al., 2020
    • Conference: KDD ‘20: Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining
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  11. XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties
    • By: Deng, D. et al., 2021
    • Journal: Journal of Chemical Information and Modeling - American Chemical Society
    • Read: Access the study, Github
  12. Advanced graph and sequence neural networks for molecular property prediction and drug discovery
  13. Heterogeneous Molecular Graph Neural Networks for Predicting Molecule Properties
    • By: Shui, Z. et al., 2020
    • Conference: IEEE International Conference on Data Mining (ICDM)
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  14. HiGNN: A Hierarchical Informative Graph Neural Network for Molecular Property Prediction Equipped with Feature-Wise Attention
    • By: Zhu, W. et al., 2023
    • Journal: Journal of Chemical Information and Modeling - American Chemical Society
    • Read: Access the study, Github
  15. Quantitative evaluation of explainable graph neural networks for molecular property prediction
  16. Cross-dependent graph neural networks for molecular property prediction
  17. Few-Shot Graph Learning for Molecular Property Prediction
    • By: Guo, Z. et al., 2021
    • Conference: WWW ‘21: Proceedings of the Web Conference 2021
    • Read: Access the study, Github
  18. GraSeq: Graph and Sequence Fusion Learning for Molecular Property Prediction
    • By: Guo, Z. et al., 2020
    • Conference: CIKM ‘20: Proceedings of the 29th ACM International Conference on Information & Knowledge Management
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  19. Motif-based Graph Self-Supervised Learning for Molecular Property Prediction
    • By: ZHANG, Z. et al., 2021
    • Conference: Advances in Neural Information Processing Systems 34 (NeurIPS 2021)
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  20. Molecular Geometry Prediction using a Deep Generative Graph Neural Network