Awesome-GNN-based-drug-discovery

Drug-Drug Interaction Prediction


Dive into the latest advances in predicting drug-drug interactions, a crucial aspect of pharmaceutical research, through this collection of studies employing cutting-edge graph neural networks and deep learning methodologies.

  1. Modeling Polypharmacy Side Effects with Graph Convolutional Networks
  2. DeepDrug: A General Graph-Based Deep Learning Framework for Drug-Drug Interactions and Drug-Target Interactions Prediction
  3. KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction
  4. DeepDDS: Deep Graph Neural Network with Attention Mechanism to Predict Synergistic Drug Combinations
    • By: Wang, J. et al., 2022
    • Journal: Briefings in Bioinformatics
    • Read: Access the study
  5. A Dual Graph Neural Network for Drug-Drug Interactions Prediction Based on Molecular Structure and Interactions
    • By: Ma, M. & Lei, X., 2023
    • Journal: PLOS Computational Biology
    • Read: Access the study
  6. Prediction of Drug-Drug Interaction Events Using Graph Neural Networks Based Feature Extraction
    • By: Al-Rabeah, M. H. & Lakizadeh, A., 2022
    • Journal: Scientific Reports - Nature
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  7. A Biomedical Knowledge Graph-Based Method for Drug-Drug Interactions Prediction Through Combining Local and Global Features with Deep Neural Networks
    • By: Ren, Z. H. et al., 2022
    • Journal: Briefings in Bioinformatics
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  8. Learning Size-Adaptive Molecular Substructures for Explainable Drug-Drug Interaction Prediction by Substructure-Aware Graph Neural Network
  9. Enhancing Drug-Drug Interaction Prediction Using Deep Attention Neural Networks
    • By: Liu, S. et al., 2022
    • Journal: IEEE/ACM Transactions on Computational Biology and Bioinformatics
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  10. SmileGNN: Drug–Drug Interaction Prediction Based on the SMILES and Graph Neural Network
  11. 3DGT-DDI: 3D graph and text based neural network for drug–drug interaction prediction
    • By: He, H. et al., 2022
    • Journal: Briefings in Bioinformatics - Oxford Academic
    • Read: Access the study, Github
  12. Multi-type feature fusion based on graph neural network for drug-drug interaction prediction